PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024745-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 216aa    MW: 25565 Da    PI: 8.4859
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024745-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-2161113456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            ++++++eql  Le+ F +++++ +e++e+LA++lgL+ rqV vWFqNrRa++k
  SMil_00024745-RA_Salv  61 KRKLSEEQLSMLERSFGSEHKLETERKERLAAELGLDPRQVAVWFQNRRARWK 113
                            45899***********************************************9 PP
2HD-ZIP_I/II116.51.5e-3760151293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +kr+ls+eq+++LE+sF +e+kLe+erK++la eLgl+prqvavWFqnrRAR+ktk lE+++++L++++++   e+++L++ev +++e
  SMil_00024745-RA_Salv  60 RKRKLSEEQLSMLERSFGSEHKLETERKERLAAELGLDPRQVAVWFQNRRARWKTKMLEEEFSKLRSHHESTLVEKCHLQTEVVKMKE 147
                            8*************************************************************************************** PP

            HD-ZIP_I/II  90 elke 93 
                            +l+e
  SMil_00024745-RA_Salv 148 QLSE 151
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.26555115IPR001356Homeobox domain
SMARTSM003894.4E-2058119IPR001356Homeobox domain
SuperFamilySSF466895.56E-1960125IPR009057Homeodomain-like
CDDcd000861.62E-1560116No hitNo description
PfamPF000461.8E-1861113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2162122IPR009057Homeodomain-like
PRINTSPR000314.5E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000314.5E-695111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
LLLLTHKFIM NHEFNDMSEY YPAGMISCQF VPEQGEAEKL KTRRRRRKGK GGEDGGGMMR  60
KRKLSEEQLS MLERSFGSEH KLETERKERL AAELGLDPRQ VAVWFQNRRA RWKTKMLEEE  120
FSKLRSHHES TLVEKCHLQT EVVKMKEQLS EAEREIQRLS ERWERVRSHS PTSSRSVSID  180
TTQHFLGAQF GIDNVFCVPD TNYAHAFQWD DHLYYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14361RRRRKGKGGEDGGGMMRKR
24562RRKGKGGEDGGGMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097229.16e-71homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU706e-61ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A4D9BUJ67e-91A0A4D9BUJ6_SALSN; Homeobox-leucine zipper protein
STRINGSolyc02g085630.2.14e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-48homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]