PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024781-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 170aa MW: 19020.6 Da PI: 7.3699

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024781-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.1	3.7e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+CakdCv++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ SMil_00024781-RA_Salv 7 PCASCKLLRRRCAKDCVFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPFHQRGDAVSSLVYEANARMRDPVYGCVGAISYLQNQVS 94 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+ +la++++e SMil_00024781-RA_Salv 95 QLQMQLAVAQAE 106 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.408	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGGGTSPCAS CKLLRRRCAK DCVFSPYFPP DDPHKFAIVH KVFGASNVSK MLQELPFHQR 60 GDAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEQQQQQ 120 PPFMPNNNDS AQDEKSLVNF SSLQHYLSFA STSSTNNVMQ DPLKRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	3	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	3	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080777.1	7e-95	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-77	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A4D8YKN4	1e-103	A0A4D8YKN4_SALSN; Uncharacterized protein
STRING	VIT_06s0004g07200.t01	8e-93	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-76	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]