PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024806-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 79aa    MW: 8944.41 Da    PI: 9.5888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024806-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.8e-133278151
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51
                           ++ykGV+ +k +g++v eI+ p   + +  r++l++++tae+Aa+a +aa  
  SMil_00024806-RA_Salv 32 CKYKGVCKRK-WGKYVFEIKLP---N-CrERIWLESYDTAEKAARAFVAALY 78
                           79*****999.*******9997...3.45*****************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-73276IPR001471AP2/ERF domain
CDDcd000182.46E-153277No hitNo description
PROSITE profilePS5103214.5793379IPR001471AP2/ERF domain
SMARTSM003809.3E-63379IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-113378IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-163378IPR001471AP2/ERF domain
PRINTSPR003672.2E-73445IPR001471AP2/ERF domain
PRINTSPR003672.2E-75672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MMKSREKQQQ PSCSATVAAL VVVQEASSSS SCKYKGVCKR KWGKYVFEIK LPNCRERIWL  60
ESYDTAEKAA RAFVAALYC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093871.19e-28ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-23ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A4D9AH882e-28A0A4D9AH88_SALSN; Uncharacterized protein
STRINGVIT_11s0016g00660.t011e-22(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]