PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024821-RA_Salv
Common NameMYB95
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 256aa    MW: 28066.4 Da    PI: 5.708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024821-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-0969109345
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++T++E+el++++++ lG++ W  Ia+ ++  +t+ ++k  w+
  SMil_00024821-RA_Salv  69 SFTPQEEELIIQLHAVLGSR-WPIIAQQLP-EKTESDVKILWN 109
                            69******************.*********.9*****997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-7562IPR009057Homeodomain-like
PROSITE profilePS500907.085660IPR017877Myb-like domain
SMARTSM00717171062IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-1510108IPR009057Homeodomain-like
PROSITE profilePS5129412.73764116IPR017930Myb domain
SMARTSM007176.9E-766114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-1368116IPR009057Homeodomain-like
PfamPF002496.0E-869110IPR001005SANT/Myb domain
CDDcd001676.71E-669112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVKTSSSELH KAAWNEDGDA KMAAAFASKQ RGTGNWTTSS KRSGQRRSGK NCRERWGNNQ  60
KPADPKLKSF TPQEEELIIQ LHAVLGSRWP IIAQQLPEKT ESDVKILWNS KLKKKLSAMG  120
IDPVTHKPFS QILADYGSMG AFRLHPLSRD LKGALPAAAG PVKAELSDPQ LDAEEASASS  180
FSWSDFFLEE AFAAQQNGGH FDDDEILQGK GDTKIDGAAG FDAAPSSSSA FVEAMIGKQD  240
EMCSQLPCFY EEPFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1681184110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594490.0KF059449.1 Salvia miltiorrhiza MYB-related transcription factor (MYB95) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071760.15e-81transcription factor MYB35-like isoform X2
TrEMBLA0A059PRW90.0A0A059PRW9_SALMI; MYB-related transcription factor
STRINGMigut.I00107.1.p1e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.13e-33myb domain protein 103
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]