PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024823-RA_Salv
Common NameWRI4
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 461aa    MW: 51681.1 Da    PI: 6.6564
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024823-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17141190155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SMil_00024823-RA_Salv 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190
                            78*******************......55************************998 PP
2AP242.22.1e-13233283155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  SMil_00024823-RA_Salv 233 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 283
                            89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-16141200IPR016177DNA-binding domain
PfamPF008472.1E-9141190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17142199IPR001471AP2/ERF domain
PROSITE profilePS5103217.82142198IPR001471AP2/ERF domain
CDDcd000181.57E-11142200No hitNo description
SMARTSM003802.3E-32142204IPR001471AP2/ERF domain
CDDcd000181.03E-24233291No hitNo description
SuperFamilySSF541711.77E-16233291IPR016177DNA-binding domain
PfamPF008474.9E-9233283IPR001471AP2/ERF domain
PROSITE profilePS5103215.514234291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15234291IPR001471AP2/ERF domain
SMARTSM003802.0E-31234297IPR001471AP2/ERF domain
PRINTSPR003671.1E-5235246IPR001471AP2/ERF domain
PRINTSPR003671.1E-5273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLNLNLAIDP SSPTADRAET ASDRHFALSG DQMEYSGSSS SSVVNVETSS TAGDENSFSD  60
HFVGFNIWKS NGDCEESEKS SYGYVTKEFF PASGGEGRMQ CLDLSENHHE LTEQRIISQE  120
QQQQKRQLVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG LDADINFNVS DYDEDLKQMR NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK CNGREAVTNF EPITYEEELS  300
SEAPVGAGDQ HNLDLNLSIA PPEKSQWQIH NMEMESFHIN YGSNNLPESE LKGSASASAA  360
AQLPHEPGNI CQYPLMWRGA DSCFRPVYKG TTIGKVVEVD PSANWTRDHY QPSPLFSTAA  420
SSGFATSSAA IHHQLPFTTA PPHHYLPPVA TLNNRSNFYW T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844550.0KJ784455.1 Salvia miltiorrhiza AP4/EREBP Transcription Factors (WRI4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.10.0floral homeotic protein APETALA 2
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0G2SJN90.0A0A0G2SJN9_SALMI; AP4/EREBP Transcription Factors
STRINGXP_009606014.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-98AP2 family protein