PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024885-RA_Salv
Common NameMYB6
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 214aa    MW: 23979.4 Da    PI: 10.0276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024885-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+t Ed ll+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
  SMil_00024885-RA_Salv 14 RGPWSTKEDSLLASYIQQHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                           89******************************99************97 PP
2Myb_DNA-binding53.27e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ +++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
  SMil_00024885-RA_Salv  67 RGNISEDEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                            7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.567961IPR017930Myb domain
SuperFamilySSF466891.72E-2811108IPR009057Homeodomain-like
SMARTSM007178.6E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221568IPR009057Homeodomain-like
CDDcd001671.24E-81661No hitNo description
PROSITE profilePS5129425.14262116IPR017930Myb domain
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2469116IPR009057Homeodomain-like
CDDcd001673.10E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRSACCSKV GLRRGPWSTK EDSLLASYIQ QHGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SEDEEDLIVR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLNTAA  120
AAADKKKIKK PPKKSAAAAA ASQDMKNSKV YAPKPMRVSS RSDSDDSLGS SDGAPEVLVS  180
AWPEVEDPAA LYHFSDSFAD DMWEKVYAEY MQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121185110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130DKKKIKKP
2125133KKIKKPPKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593600.0KF059360.1 Salvia miltiorrhiza MYB-related transcription factor (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101013.12e-89transcription factor MYB6-like isoform X1
SwissprotQ388503e-65MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A059PRI21e-156A0A059PRI2_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000316075e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-65myb domain protein 5
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]