PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025020-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GeBP
Protein Properties Length: 245aa    MW: 27966.4 Da    PI: 9.3592
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025020-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57348.23e-1550137397
                 DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                            +++++s+eD i+lL+ l  f a+      + + +f+++vk+++s  ++++ q++eK+r+L kK+k+++++   g   + +++h+  ++
  SMil_00025020-RA_Salv  50 SSKVFSDEDSITLLKSLAVFWASGR---NNKWADFHRIVKDKLSKpDFTRVQISEKVRSLNKKYKTNWQR---G--RVPDNPHELVVY 129
                            6799****************66544...468999********98648***********************...4..456799****** PP

                 DUF573  90 elskkiWg 97 
                            elsk +W+
  SMil_00025020-RA_Salv 130 ELSKPLWE 137
                            *******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-1551137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSAKENEMRK QGDSDCSSDS GGDSDCSSDS GSGAQAMTLA LKPKHPPPSS SKVFSDEDSI  60
TLLKSLAVFW ASGRNNKWAD FHRIVKDKLS KPDFTRVQIS EKVRSLNKKY KTNWQRGRVP  120
DNPHELVVYE LSKPLWEDEM NQESGKVWED EMNQESGKGM KKNKKRKRER NPTLDEFRSS  180
YPNLYASFNM FGFPKIARKR CVLLGREKAQ KLENEWKQLT EELHCLEGKR LALSTKPTGD  240
NSEEG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13664413