PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025236-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 693aa MW: 80586 Da PI: 6.5467

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025236-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ ++kk++ +++r+r++ r+gC+ak+ ++ke d +w v ++++ H SMil_00025236-RA_Salv 68 EYYGSFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPPRKKQAGEHQRERKSVRCGCDAKMYLSKEVvdgDFQWFVVQFSNVH 154 59******************8888.***************************************99877779****** PP FAR1 86 nHela 90 nHel SMil_00025236-RA_Salv 155 NHELL 159 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-20	291	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.089	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-8	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MVSLQSKSVW MKRQQCPCGD WKCFVTYEGN TDEGSVVSQL IKNDLGPNET MVAPYVGMVF 60 KSDDEAFEYY GSFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPPR KKQAGEHQRE 120 RKSVRCGCDA KMYLSKEVVD GDFQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP INRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKAVQEN DALLTEKREN 240 DTMDLLEACR ANKEADPFFV YDVAVDENDK VENVAWSFGD SIHAYNMFGD VVYFDSTFSS 300 MVYGMLFGAW LGIDNHGKVL FFGCALMQDE TPQSFAWSLQ AFLRFMKGRY PQTIITDIDT 360 GLREAIRSEM PNTKHVISLY NILPRMSCWF SLPLGPRFSQ FKYEFEELCH LETTDEFEFR 420 WNQMVSHFEL NSDKHIVLLF SLRMCWALPY IRGCFLARMD SSSYWKSLDV ILKEVIKTQT 480 CLRGLLEQTG LSSNYRMKSH DQTQYMHLKT CLPIEEHARN VLTPFAFDHT QHEMVLSLQY 540 AASEMANGSY LVHHFKKVDG ERLVIWIPED EQIHCSCKEF ESTGILCRHA LRVLLFKNYF 600 QLPSKYLLNR WRQESSLFCY SGESNIKMKD EWYQEFHSLT GTLFSEAMLT KERSDFVHRE 660 LTKELTRLTS QVRDMPAGDE GVTDVTLSPT NAL

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MVSLQSKSVW MKRQQCPCGD WKCFVTYEGN TDEGSVVSQL IKNDLGPNET MVAPYVGMVF  60
KSDDEAFEYY GSFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPPR KKQAGEHQRE  120
RKSVRCGCDA KMYLSKEVVD GDFQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP INRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKAVQEN DALLTEKREN  240
DTMDLLEACR ANKEADPFFV YDVAVDENDK VENVAWSFGD SIHAYNMFGD VVYFDSTFSS  300
MVYGMLFGAW LGIDNHGKVL FFGCALMQDE TPQSFAWSLQ AFLRFMKGRY PQTIITDIDT  360
GLREAIRSEM PNTKHVISLY NILPRMSCWF SLPLGPRFSQ FKYEFEELCH LETTDEFEFR  420
WNQMVSHFEL NSDKHIVLLF SLRMCWALPY IRGCFLARMD SSSYWKSLDV ILKEVIKTQT  480
CLRGLLEQTG LSSNYRMKSH DQTQYMHLKT CLPIEEHARN VLTPFAFDHT QHEMVLSLQY  540
AASEMANGSY LVHHFKKVDG ERLVIWIPED EQIHCSCKEF ESTGILCRHA LRVLLFKNYF  600
QLPSKYLLNR WRQESSLFCY SGESNIKMKD EWYQEFHSLT GTLFSEAMLT KERSDFVHRE  660
LTKELTRLTS QVRDMPAGDE GVTDVTLSPT NAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095923.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A4D9AZJ3	0.0	A0A4D9AZJ3_SALSN; Uncharacterized protein
STRING	Migut.M01435.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]