PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025248-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 437aa    MW: 49267.8 Da    PI: 7.8423
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025248-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.23.8e-1266120261
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 
                            W+++e laL+++r+ me ++ +       We+vs+k+ e gf+rs ++Ckek+e+ + r+
  SMil_00025248-RA_Salv  66 WSHDELLALLKLRSTMEIWFPDF-----TWEHVSRKLGELGFKRSGEECKEKFEEESCRH 120
                            ********************998.....9*************************977665 PP
2trihelix93.22.6e-29330417185
               trihelix   1 rWtkqevlaLiearremeerlr....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            rW+++ev+aLi++r + +   +    ++  ++plWe++sk m+e g++rs+k+Ckekwen+nk+++k+++++kkr s +s+tcpyf+q
  SMil_00025248-RA_Salv 330 RWPRDEVQALIKLRCKAGGGGGgggeEEGGRGPLWERISKGMMEMGYKRSAKRCKEKWENINKYFRKTRDSSKKR-SVNSRTCPYFHQ 416
                            8**************9999988433334699*******************************************8.78888******* PP

               trihelix  85 l 85 
                            l
  SMil_00025248-RA_Salv 417 L 417
                            9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.362119IPR001005SANT/Myb domain
PfamPF138375.1E-864125No hitNo description
PROSITE profilePS500906.6265117IPR017877Myb-like domain
SMARTSM007170.025327393IPR001005SANT/Myb domain
CDDcd122031.40E-20329398No hitNo description
PfamPF138376.2E-18329417No hitNo description
Gene3DG3DSA:1.10.10.601.5E-4329392IPR009057Homeodomain-like
PROSITE profilePS500907.561330391IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MFDGSEQFHQ FIASSRASLP ISLPFPTLPS FDPYAPPLHH PSSAKKYPLI STNLALESDP  60
STADPWSHDE LLALLKLRST MEIWFPDFTW EHVSRKLGEL GFKRSGEECK EKFEEESCRH  120
FAASKSYRIL SELDEFYPQV PARQGQEDEA ETSKNDEDVV ILRNPEAEAA AEEAEEKGGN  180
HDNNNNNNNS NNRSRSKRKR RDKLETTFKG FCEAVVSKMM AKQEELHRRL MDDVVRREEE  240
KIAREEAWRG REAERARREL EARSKEQKTA AERQATIIDF LKHFSGSSSA SRSPELVDAS  300
NSNVSNSSAS FHPAAPPSPS SGAGAGAGRR WPRDEVQALI KLRCKAGGGG GGGGEEEGGR  360
GPLWERISKG MMEMGYKRSA KRCKEKWENI NKYFRKTRDS SKKRSVNSRT CPYFHQLSCL  420
YSDGTIVAPN RSDAEMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197RSRSKR
2197202RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022863579.11e-120trihelix transcription factor GTL2
TrEMBLA0A4D8XPB51e-143A0A4D8XPB5_SALSN; Uncharacterized protein
STRINGXP_004495792.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-33Trihelix family protein