PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025263-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

ZF-HD

Protein Properties

Length: 103aa MW: 10947 Da PI: 8.0003

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025263-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.4	6e-32	31	87	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAa++Gg+avDGC+Efmp geegta al+CaACgCHRnFHRreve e SMil_00025263-RA_Salv 31 AVRYGECQKNHAANVGGYAVDGCREFMPC-GEEGTAGALTCAACGCHRNFHRREVEGE 87 79************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-17	1	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-29	32	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-26	33	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.679	34	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MKKRQVVFKR GGDQGHHQSS NSANSSYAVR AVRYGECQKN HAANVGGYAV DGCREFMPCG 60 EEGTAGALTC AACGCHRNFH RREVEGEMAA CDCASSPTSS SNT

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098623.1	6e-45	mini zinc finger protein 2
Refseq	XP_011098624.1	6e-45	mini zinc finger protein 2
Swissprot	Q9LJW5	2e-35	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A4D9B9B9	3e-52	A0A4D9B9B9_SALSN; Uncharacterized protein
TrEMBL	A0A4D9BTZ7	3e-52	A0A4D9BTZ7_SALSN; Uncharacterized protein
STRING	XP_002534013.1	3e-40	(Ricinus communis)
STRING	XP_009596464.1	3e-40	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-24	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]