PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025303-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 338aa MW: 36776.8 Da PI: 5.7866

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025303-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.5	8.4e-33	105	177	1	73
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a+g+kdrhsk+ T++g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + + ++++ SMil_00025303-RA_Salv 105 ATGRKDRHSKVRTARGPRDRRVRLSPTTAIQFYDVQDRLGYDRPSKAIDWLINEAKTAIDALDDHPRAHSNAG 177 589************************************************************9966666333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-30	106	185	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.841	108	166	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MYAPINQIQS PDDEDEERDD VVQGSSFLSY YNPNFGEAED LAAKSPNQKC ADFACFNGAV 60 STASTPFKIS CERLIREGFD LASPQMKAKK RKAEAADGGG RVVRATGRKD RHSKVRTARG 120 PRDRRVRLSP TTAIQFYDVQ DRLGYDRPSK AIDWLINEAK TAIDALDDHP RAHSNAGGFS 180 LSQHEDLNGD GLASGGFSCF VGETPPPPAA VYLNQDYQLG FCSASNSKPQ ILETNCEVGR 240 LQRMFTWNSV NESSGNARGG GGGELSSCNS LAPPLSVNNS LFREPLQSSI INYTLINNDF 300 AGINFSNELS KIAASATPKQ DENLKKLIFS MPSAQYQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	113	166	1	54	Putative transcription factor PCF6
5zkt_B	1e-19	113	166	1	54	Putative transcription factor PCF6

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087013.1	2e-78	transcription factor TCP4-like
TrEMBL	A0A2G9HDK7	1e-58	A0A2G9HDK7_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-34	TCP domain protein 10