PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025446-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 191aa MW: 21530.1 Da PI: 9.5052

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025446-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.5e-37	58	116	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC s++tkfCy+nny+++qPr+fCk+C+ryWt GG++rnv vG+grrk k+ SMil_00025446-RA_Salv 58 PEKIIPCPRCSSMDTKFCYFNNYNVNQPRHFCKQCQRYWTSGGTMRNVAVGSGRRKTKT 116 78999***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.3E-31	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.233	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	64	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSAIKLFGKT ISPDHLFSDA SLSQQRHSSF ASSTSLDSKD ESSDYESSNG SEEKAKKPEK 60 IIPCPRCSSM DTKFCYFNNY NVNQPRHFCK QCQRYWTSGG TMRNVAVGSG RRKTKTALDH 120 TDFLFSFYCA SPPSLLGKHS RDEWRINNVS DAVGMFRESK APARIPLDDR ALLLRANPAA 180 FSRSLNFHER A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021893	9e-33	AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBank	AK068588	9e-33	AK068588.1 Oryza sativa Japonica Group cDNA clone:J013152P10, full insert sequence.
GenBank	AP014966	9e-33	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	9e-33	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460726.1	5e-43	PREDICTED: cyclic dof factor 1-like
Swissprot	P68350	3e-37	DOF15_ARATH; Dof zinc finger protein DOF1.5
Swissprot	Q93ZL5	1e-35	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A4D8ZGF8	1e-65	A0A4D8ZGF8_SALSN; Dof zinc finger protein DOF5.5
STRING	Gorai.012G186900.1	2e-42	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-31	cycling DOF factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]