PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025637-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 211aa    MW: 24235.6 Da    PI: 9.08
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025637-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1618991695
                           EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                           l lpk f++++g++   s  ++l+++sg sW+v+l   r  + +    y++t+GW +F ++ +Lk+ +++vF + ++s+f  +v 
  SMil_00025637-RA_Salv 18 LLLPKGFTDKYGEN--LSERVRLRNKSGTSWNVRLEKmREEG-EetdaYYFTRGWTKFSNDVDLKTFEVLVFFYAENSTFDVTVY 99
                           89*********966..8889***************6643333.24678**************************99999966665 PP
2B331.43.3e-101271941283
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            + + + +pk+f +++g+k++  ++++le + g s +vk+  + + gr+ +++GW++F kan+   + +  ++
  SMil_00025637-RA_Salv 127 NYHKFHVPKDFSDACGLKEK--REVRLECLGGSSARVKV--NSCNGRVDFGGGWSGFFKANNFAINRTYSLE 194
                            457799**********9955..58***************..99999****************9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.1263102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-184100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-14599No hitNo description
SMARTSM010192.3E-87102IPR003340B3 DNA binding domain
PfamPF023621.5E-1318100IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-11117196IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.063118207IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-11123196IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-8127194IPR003340B3 DNA binding domain
PROSITE profilePS508636.879133211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDTRPSFYKI LMDLPPKLLL PKGFTDKYGE NLSERVRLRN KSGTSWNVRL EKMREEGEET  60
DAYYFTRGWT KFSNDVDLKT FEVLVFFYAE NSTFDVTVYA VTALEREPAG FRAAGNPMCR  120
FDLKQHNYHK FHVPKDFSDA CGLKEKREVR LECLGGSSAR VKVNSCNGRV DFGGGWSGFF  180
KANNFAINRT YSLEFLPAKN VIRVGPDYLL S
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-08B3 family protein