PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025712-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 119aa    MW: 13365.7 Da    PI: 10.4689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025712-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-093883555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           h+   rrR ++iN+++  Lr l+P++     + ++K ++L +A+ Y+k Lq
  SMil_00025712-RA_Salv 38 HSHYKRRRDNKINKRLRVLRNLIPNC-----TQMDKESVLDEAIVYLKCLQ 83
                           6667799999***************9.....89****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.7E-133089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.64E-93087No hitNo description
SuperFamilySSF474591.26E-143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4693382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-63883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-93988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEKTCGYSKA RANCQDSSSS SHISAMQAMK KRKRAAPHSH YKRRRDNKIN KRLRVLRNLI  60
PNCTQMDKES VLDEAIVYLK CLQLQLQIMP SFGGLCVPAT PIQLFGLPLG GYGTMAQQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13044KRKRAAPHSHYKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575590.0KP257559.1 Salvia miltiorrhiza clone 127 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0H3YBW99e-84A0A0H3YBW9_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1524888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-18phytochrome interacting factor 3