PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025808-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 297aa    MW: 33315.8 Da    PI: 7.3887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025808-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-1485136155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  SMil_00025808-RA_Salv  85 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 136
                            79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-1383138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1683152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-1283140No hitNo description
PROSITE profilePS5088815.12384135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1185136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-1090141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTMEALSSSE LLNFIMYDTN VSAPLSCNNN DSSEASPREI GSCSSRPRPT HPPPPAETAS  60
VALQGRKKRR RRPKVCKNKE EAETQRMTHI AVERNRRKQM NEHLAVLRSL MPDSYVQRGD  120
QASIVGGAIE FVKELEHILQ SLEAKKFALL EHGNVTNKEH HDDEEIRNDD RNLGSPFAQF  180
FAYPQFSCSH SQVSNKYTSQ SKAAIADIEV TLIETHANIR VLSRRRVRQL SKMVASFQSI  240
FLAILHLNVT TLDTLVLYSI SAKVEEGCQL NSADDIAGAV HHMLRIIEEE AILGCHT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571RKKRRRR
26671KKRRRR
38596RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575270.0KP257527.1 Salvia miltiorrhiza clone 94 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070274.11e-147transcription factor bHLH71
SwissprotQ9C7T45e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0H3YB550.0A0A0H3YB55_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.O00536.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]