PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026132-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 211aa MW: 24212.6 Da PI: 9.1197

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026132-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.3e-18	18	99	16	95
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l lpk f++++g++ s ++l+++sg sW+v+l r + + y++t+GW +F+++ +Lk+ +++vF + ++s+f +v SMil_00026132-RA_Salv 18 LLLPKGFTDKYGEN--LSERVRLRNKSGTSWNVRLEKmREEG-EetdaYYFTRGWTKFCNDVDLKTFEVLVFFYAENSTFDVTVY 99 89*******966..8889***********6643333.24678************************99999966665 PP
2	B3	32.6	1.4e-10	127	194	12	83
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + + + +pk+f +++g+k++ ++++le + g s +vk+ + + gr+ l++GW++F kan+ + + ++ SMil_00026132-RA_Salv 127 NYHKFHVPKDFSDACGLKEK--REVRLECRGGSSARVKV--NSCNGRVDLGGGWSGFLKANNFAINRTYSLE 194 457799********9955..58***********..9999***************9988776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.408	3	102	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.2E-20	4	99	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-19	5	107	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.82E-16	5	99	No hit	No description
SMART	SM01019	5.2E-10	7	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.2E-15	18	100	IPR003340	B3 DNA binding domain
SMART	SM01019	0.096	118	207	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.71E-11	120	196	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-11	123	196	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.2E-8	127	194	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	7.26	133	211	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDTRPSFYKI LMDLPPKLLL PKGFTDKYGE NLSERVRLRN KSGTSWNVRL EKMREEGEET 60 DAYYFTRGWT KFCNDVDLKT FEVLVFFYAE NSTFDVTVYA VTALEKEPAG FRAAANPMCR 120 FDLKQHNYHK FHVPKDFSDA CGLKEKREVR LECRGGSSAR VKVNSCNGRV DLGGGWSGFL 180 KANNFAINRT YSLEFLPAKN VIRVGPDYLL S

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6635	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	2e-08	B3 family protein