PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026183-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

YABBY

Protein Properties

Length: 185aa MW: 21034.9 Da PI: 9.5655

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026183-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202	2.5e-62	2	158	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 + seq y+ CnfCn +lavsvP +sl+ vvtvrCGhC++l +vn+a + + ++++ ++ ++ + ++++++ ++ k + + SMil_00026183-RA_Salv 2 DVSEQFRYIPCNFCNIVLAVSVPCSSLLDVVTVRCGHCSNLWTVNMA--AAAFPSMQP------PSSCQDFQATNSSTTPTEYKVDLS 81 5799************************************96655..556666664......556667777777776666666666 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+ ++k ++ + + p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl SMil_00026183-RA_Salv 82 SSSKWNYK-TQPSISKKPEPRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 158 66666655.33334444555569***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-67	4	158	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	96	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-4	112	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDVSEQFRYI PCNFCNIVLA VSVPCSSLLD VVTVRCGHCS NLWTVNMAAA AFPSMQPPSS 60 CQDFQATNSS TTPTEYKVDL SSSSKWNYKT QPSISKKPEP RIVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPEISHREA FSTAAKNWAH FPHIHFGLML ETNSQPKLNE GPEKHQFRRA 180 AIRNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	9e-96	axial regulator YABBY 5
Swissprot	Q8GW46	9e-75	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A4D9AY68	1e-114	A0A4D9AY68_SALSN; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	3e-89	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-77	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]