PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026211-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 133aa MW: 15070.6 Da PI: 8.4464

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026211-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	15	37	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H SMil_00026211-RA_Salv 15 FPCSYCSRKFHSSQALGGHQNAH 37 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.7E-6	13	42	No hit	No description
Pfam	PF13912	3.0E-6	15	39	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.572	15	42	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	17	37	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MESSANKAED APKFFPCSYC SRKFHSSQAL GGHQNAHKKE RSAAGKSKRG ASDYALMASP 60 PLINYPIGIQ YGGFGSFQEV ALYHQYNVAH AHEQRSRVRC VDDYSAQPYP YAYGDYHYET 120 RHRDHNLDLS LHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8Y2F2	1e-38	A0A4D8Y2F2_SALSN; Uncharacterized protein
STRING	XP_008365938.1	2e-16	(Malus domestica)
STRING	Migut.D00516.1.p	2e-16	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7969	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	4e-14	C2H2 family protein