PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026235-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 397aa    MW: 44567.1 Da    PI: 8.0156
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026235-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.66.6e-24179232155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kp++ Wt+ LH rF+ea++++ G e+ +Pk+ile+m+v+gLt+e+v+SHLQkYR+
  SMil_00026235-RA_Salv 179 KPKVIWTNALHYRFLEAIRSI-GLERSVPKKILEAMNVPGLTRENVASHLQKYRM 232
                            799******************.********************************7 PP
2Response_reg72.32e-24231301108
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            +l+vdD+ + +  ++ +l+k +y ev +a+++ +al  l+ k   +Dl++ Di mp+m+G++l + i+ e  +lp+i+++  ++e  +
  SMil_00026235-RA_Salv  23 ILVVDDDTTCLAFVAALLKKFKY-EVVTAKHPNDALCALRIKGgaFDLVVSDIHMPDMNGFQLQEAITHEF-NLPVILMSVDSKEGVV 108
                            89*********************.*************99666556**********************9888.9*************** PP

                            HHHHHTTESEEEESS--HHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelv 108
                             + +k Ga  f+sKp++p++  
  SMil_00026235-RA_Salv 109 SKGMKSGAALFISKPVSPNDFK 130
                            *****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-2820137IPR011006CheY-like superfamily
SMARTSM004482.1E-2421133IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.5E-3121163No hitNo description
PROSITE profilePS5011034.35122137IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.7E-2123130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.75E-2424137No hitNo description
Gene3DG3DSA:1.10.10.607.5E-25177236IPR009057Homeodomain-like
SuperFamilySSF466891.18E-17177236IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23179232IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MECENICLNR SSKSRRSCDS VSILVVDDDT TCLAFVAALL KKFKYEVVTA KHPNDALCAL  60
RIKGGAFDLV VSDIHMPDMN GFQLQEAITH EFNLPVILMS VDSKEGVVSK GMKSGAALFI  120
SKPVSPNDFK DLWQFVAMRK KSPVVIEEAN NYFPPKKTVN NKENSKRKPQ SESDVNTKKP  180
KVIWTNALHY RFLEAIRSIG LERSVPKKIL EAMNVPGLTR ENVASHLQKY RMFLKRVSDA  240
SYKLDVVLGS ININPRNSEI ISTLSSTHPM RKKSENGVKF HSNELQNNID QSCYVPKRQH  300
LSQDELPPLP LPPSSNLPLI QDLQINGGPF CSVYDLPAFD MIASHVQQPF NLNPTHLQNN  360
QLINIKDQEK CDDNAALESL IAFGLFGEDQ YQTLEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-20178238464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165180KRKPQSESDVNTKKPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076492.21e-112two-component response regulator ARR10-like
TrEMBLA0A4D9BPT31e-170A0A4D9BPT3_SALSN; Two-component response regulator ARR-B family
STRINGMigut.F01146.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-54response regulator 1