PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026274-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 183aa    MW: 20599.2 Da    PI: 6.5652
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026274-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB34.54.8e-1145138694
                  NF-YB   6 rflPianvsrimkkvlPanak.....iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            ++lP + v r++k  l + +      + +d+     e +  fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl+  l+
  SMil_00026274-RA_Salv  45 AELPKTIVRRVVKDKLSQLSTgseipVLRDSLIAFSESARIFIHYLSATANDICKESNRQIINAEDVFKALEEIEFPEFIGPLRDSLE 132
                            567777788888877654332111114567888889999************************************************* PP

                  NF-YB  89 kyrele 94 
                            ++r+ +
  SMil_00026274-RA_Salv 133 EFRQRN 138
                            ***876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-2842171IPR009072Histone-fold
PfamPF008081.9E-845115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.53E-2246170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
LQQLQLAHSP SSTANRIKAL SFERVREMSE EKKDDEATEN VVAEAELPKT IVRRVVKDKL  60
SQLSTGSEIP VLRDSLIAFS ESARIFIHYL SATANDICKE SNRQIINAED VFKALEEIEF  120
PEFIGPLRDS LEEFRQRNAG KKQSKAKQTN TKAKRKEAPP PEPNEGQNKR QAREAVASAP  180
LED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850173.11e-63PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A4D9BYI11e-77A0A4D9BYI1_SALSN; DNA polymerase epsilon subunit 3
STRINGMigut.D02442.1.p5e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-36nuclear factor Y, subunit B11