PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026336-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 196aa    MW: 22041 Da    PI: 8.4816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026336-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-0953104154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            +++ah   Er+RR+++   ++ Lr+llP       ++K   ++   +Av+Y++++
  SMil_00026336-RA_Salv  53 KKTAHRFTERQRRQEMSGLYASLRSLLPLqY---VKGKRAVSDHMHQAVNYVNDM 104
                            799**************************66...9999999**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1249119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.82752104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-852109No hitNo description
Gene3DG3DSA:4.10.280.104.9E-953120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-653104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MLPISSDGVS EDPSIFLELE DLLADCPIPD GNQNTVKKSS ASSQVEENNQ DSKKTAHRFT  60
ERQRRQEMSG LYASLRSLLP LQYVKGKRAV SDHMHQAVNY VNDMKKNIEQ LQKRRDKLRN  120
ITTSADPTTN AGDSPRCVKI NLFKDGMEIL ITHSLSNKSF PLSKVLAYLL DRQLNVVHCV  180
STTTAPSTFL QTIHIE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575350.0KP257535.1 Salvia miltiorrhiza clone 102 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076269.13e-61transcription factor bHLH36-like
TrEMBLA0A0H3YC651e-143A0A0H3YC65_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.F01201.1.p3e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.17e-29bHLH family protein