PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026337-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 223aa MW: 25636.1 Da PI: 9.0253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026337-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	66	117	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++h e Er+RR+++ + ++ L +llP+ + ++K + ++A +Ik++ SMil_00026337-RA_Salv 66 KKVMHRELERKRRQEMSHLYASLSSLLPHhQ---IKGKHGVCDQIQEAASHIKKM 117 6899*************************55...999999999999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-12	63	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.405	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-6	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	67	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.07E-6	68	122	No hit	No description
SMART	SM00353	0.0011	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MFPNHHELGF GTPTTTSQGF QIGQDTDYNF LENNLISFSI GTNDTEVSRR KDLELHGKTK 60 KESSSKKVMH RELERKRRQE MSHLYASLSS LLPHHQIKGK HGVCDQIQEA ASHIKKMEKK 120 IEELKIRRNK LNGDVETSNG IYNNVIINIV ADGMEIIISH SSERSDLGLS RVLAELQWRE 180 FDVISSVSTR MKDRFVHKIQ VEARDISNLD VLMLRDRLTE AIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	ERKRRQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257536	0.0	KP257536.1 Salvia miltiorrhiza clone 103 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0H3Y7M8	1e-162	A0A0H3Y7M8_SALMI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	5e-21	bHLH family protein