PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026424-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 247aa MW: 29017.2 Da PI: 5.3163

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026424-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.3	8.3e-23	32	102	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W+ +e+++ +++r +++ ++ ++k++k lWe vs +m + g++r+p+qCk+kw+nl +ryk ++++e+ + SMil_00026424-RA_Salv 32 QWSSEETRDFLAIRGDLDPTFMETKRNKLLWELVSTRMNQIGYNRTPIQCKCKWKNLVTRYKGCETMEEVE 102 7*****************************************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.51E-23	31	96	No hit	No description
Pfam	PF13837	4.8E-18	31	103	No hit	No description
SuperFamily	SSF46689	8.46E-5	32	103	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.282	33	89	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MYMDHSQFSQ VQNPYVGVSV ETGLGCGDRN PQWSSEETRD FLAIRGDLDP TFMETKRNKL 60 LWELVSTRMN QIGYNRTPIQ CKCKWKNLVT RYKGCETMEE VEMRERAFHL QEMQIIFNAR 120 MQRMMWQEVE GGAISPQMVS KAANSGCSSG NSSPVVDGLK EMMEEFMRQQ MELEMQWIKL 180 MRRERIGGER GEMDGGQRME ALESERLMMN SWWREREEER KMREEARAER RDALLTALLD 240 NLTRGAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024968667.1	5e-76	trihelix transcription factor GT-3b
TrEMBL	A0A2Z7B1Q6	7e-80	A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRING	XP_010264622.1	7e-71	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4187	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	5e-42	Trihelix family protein