PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026473-RA_Salv

Common Name

WRKY47

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 238aa MW: 26719.6 Da PI: 5.1465

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026473-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.6	4.7e-32	83	139	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers ed ++++itYeg H h SMil_00026473-RA_Salv 83 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSIEDSETLIITYEGLHLH 139 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-30	74	139	IPR003657	WRKY domain
PROSITE profile	PS50811	27.669	77	142	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	78	140	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	82	141	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	83	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MMDELLKLRE GSEDDELVRE LLDELSPLFM QPYNMESASI FSSAAYSAPM ADEIETDSSY 60 SSNGIHGLGH GDYKSEADSV MADDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCNAKKQVE 120 RSIEDSETLI ITYEGLHLHY TYPFLLLNNQ QPDPPFKKHK GPRADPKAHD YAAQTENGLE 180 KMSQQGLLED VVPLTIRKPL VMDATSSHSS SSTSHDRSSQ PSSPASTNSF TYSYLGLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	81	139	13	71	WRKY transcription factor 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM823170	0.0	KM823170.1 Salvia miltiorrhiza WRKY protein (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094877.1	4e-76	probable WRKY transcription factor 49
TrEMBL	A0A0D5YAF9	1e-158	A0A0D5YAF9_SALMI; WRKY protein
STRING	Migut.J00318.1.p	6e-73	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	4e-39	WRKY DNA-binding protein 49