PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026668-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 252aa MW: 28773.9 Da PI: 9.5281

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026668-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.2	5.4e-17	22	103	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s+ l++p kf+ ++ + + ++le+e + W+vk+ + + +++t+GW+eFv +n++ e+Df++F+++ +s+f +v+v+r+ SMil_00026668-RA_Salv 22 SSKLCIPTKFMMKYRQAVQ--HSVVLETEYSpTLWDVKI--KHLNSDFYMTDGWSEFVTDNQVGERDFLTFRFVAESTF--KVSVYRS 103 3459********54433..36*877699*..555555***********************9998888..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.61E-20	8	106	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.731	10	104	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-20	11	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.51E-13	12	102	No hit	No description
SMART	SM01019	1.1E-13	13	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-14	22	103	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	7.542	150	252	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.67E-7	151	240	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.3E-7	151	240	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.019	153	249	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
LRMPRSEYQR ASFMKLCLGD FSSKLCIPTK FMMKYRQAVQ HSVVLETEYS PTLWDVKIKH 60 LNSDFYMTDG WSEFVTDNQV GERDFLTFRF VAESTFKVSV YRSNGCATSP ISSDVDESGI 120 KRRSVRPPKK KIEKVAKASR MNCVVKEGNP LCFEACLNPH RRYRINLPKE FTDASNMKVK 180 NQVRVEFVGN GGGRGVFHVT VDARPPPHSR VDLAMGWSQF RVANGLVVGE SYSFEFNPDD 240 QVIYVKEASP FP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	134	RPPKKKIEKV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6635	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	5e-12	B3 family protein