PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026669-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 241aa    MW: 28117.6 Da    PI: 10.4984
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026669-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.9e-1711101197
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ffkvl  s++  +++l+lp +f++++++  + +++l++ d sgr+W+v++  ++ +++ + + +GW +Fv++  Lk g+f+vF+++ +
  SMil_00026669-RA_Salv  11 FFKVL--SNMDFRKLLRLPPHFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFMNGWGKFVEDAALKLGEFLVFSVVAK 93 
                            89***..88888889***********98877777777555.*********..777777799999********************8764 PP

                            SEE..EEEEE CS
                     B3  88 sefelvvkvf 97 
                            se   +v ++
  SMil_00026669-RA_Salv  94 SEL--NVVIY 101
                            544..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-205104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-215104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-159101No hitNo description
PROSITE profilePS5086313.5359104IPR003340B3 DNA binding domain
SMARTSM010193.4E-1411104IPR003340B3 DNA binding domain
PfamPF023621.9E-1411101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-8138233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-9139235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.586143241IPR003340B3 DNA binding domain
SMARTSM010190.021145241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSWRSKEKPS FFKVLSNMDF RKLLRLPPHF LRKYELTLPA NVKLRVDDSG RRWNVRVERM  60
DDGLFCFMNG WGKFVEDAAL KLGEFLVFSV VAKSELNVVI YETSCWKREI PPVELNAYGL  120
YVRKGANDVA TSERNENSKE SNPLYFKIHL RAFHKSRIML PKPFSKAAKM KARKRVRLEY  180
EGRHGGGGCF AAALRPQKSG RVDLGKGWYD FRVANGLRYD RVYSFEMKSD DDQVIYVKRL  240
N
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-10B3 family protein