PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026677-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 174aa    MW: 19612.8 Da    PI: 4.9187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026677-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1881131255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++Ae r p     k  r +lg++ t+eeAa a+++a+ kl+g
  SMil_00026677-RA_Salv  81 RYRGVRRRP-WGKFAAEMRNP---DrKGSRLWLGTYETPEEAAMAYDRAAFKLRG 131
                            8********.*******9997...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-3180141No hitNo description
Gene3DG3DSA:3.30.730.108.7E-3181140IPR001471AP2/ERF domain
SMARTSM003804.1E-3681145IPR001471AP2/ERF domain
PfamPF008473.3E-1481131IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2381140IPR016177DNA-binding domain
PROSITE profilePS5103224.31681139IPR001471AP2/ERF domain
PRINTSPR003671.7E-108293IPR001471AP2/ERF domain
PRINTSPR003671.7E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEAQNVSELD LAWLDSIQNF LLSDIDFDFG FDSSPTDSPL NATPINDDSD YSTQMIEELL  60
SDDSDSAVSE EPPQSVAEWK RYRGVRRRPW GKFAAEMRNP DRKGSRLWLG TYETPEEAAM  120
AYDRAAFKLR GSRARVNFPH LIGSGVSEPT RVTKRRRISQ DATVSTSKKM KTGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2877145169ATERF1
3gcc_A3e-2877145169ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.11e-66ethylene-responsive transcription factor 13-like
TrEMBLA0A4D8ZUJ82e-81A0A4D8ZUJ8_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000914741e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-39ethylene-responsive element binding factor 13