PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026708-RA_Salv
Common NameMYB18
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 197aa    MW: 22456.9 Da    PI: 9.8466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026708-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+  ++ +G+g +W + + ++g++R++k+c++rw++yl
  SMil_00026708-RA_Salv 14 KGPWSPEEDAKLKSHIQNHGTGgNWIALPTKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding38.72.3e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g++T+ Ed l+ ++    G++ W+ Ia+ ++ gRt++++k++w++
  SMil_00026708-RA_Salv  69 GSFTENEDILICNLYVTIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                            78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.734962IPR017930Myb domain
SuperFamilySSF466893.55E-2612109IPR009057Homeodomain-like
SMARTSM007173.5E-111364IPR001005SANT/Myb domain
PfamPF002498.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001674.57E-81662No hitNo description
PROSITE profilePS5129420.10563117IPR017930Myb domain
SMARTSM007173.6E-1067115IPR001005SANT/Myb domain
PfamPF002493.6E-1169111IPR001005SANT/Myb domain
CDDcd001678.23E-770113No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRAPCCDKA KVKKGPWSPE EDAKLKSHIQ NHGTGGNWIA LPTKIGLKRC GKSCRLRWLN  60
YLRPNLKHGS FTENEDILIC NLYVTIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRRSSPAANI PPLPLPPFHH AQQHHNVYSP IIHLPSISME NVISWEHMNY QPWMLFDDPS  180
LLPTLSPSLA CFNDEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
1h8a_C6e-241111724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593720.0KF059372.1 Salvia miltiorrhiza MYB-related transcription factor (MYB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362138.12e-79transcription factor RAX3-like
SwissprotQ9M2Y93e-76RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A059PSL21e-145A0A059PSL2_SALMI; MYB-related transcription factor
STRINGXP_008778085.16e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-74myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]