PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026728-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 161aa MW: 18012.2 Da PI: 6.1189

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026728-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.4	8e-28	8	131	6	131
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 +rh k+ T++g+ dRRvRls+++a++f+dLqd+LG+d++sk+ eWLl++a +i el+ ++s + ++ s+++ +s+ +s+ SMil_00026728-RA_Salv 8 SRHIKVLTSKGLQDRRVRLSVNTAIQFYDLQDRLGYDQPSKAMEWLLKAAASSIAELPPMNTSFLD-TpKQLSDEKRSSTTGSDqlcf 94 59********************************************************99333331.122222222222222222223 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertrekmr 131 +sr+++r +are t+e+ + SMil_00026728-RA_Salv 95 dsaeidldggvviriT---------------------PSSSRSESRIKAREWTKERVA 131 2222222222222220.....................223333333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.764	6	64	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-29	9	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTLIHMYSRH IKVLTSKGLQ DRRVRLSVNT AIQFYDLQDR LGYDQPSKAM EWLLKAAASS 60 IAELPPMNTS FLDTPKQLSD EKRSSTTGSD QLCFDSAEID LDGGVVIRIT PSSSRSESRI 120 KAREWTKERV ADKEEENAPT HAGSLNPISH TTSFTELLNG E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-23	12	65	2	55	Putative transcription factor PCF6
5zkt_B	3e-23	12	65	2	55	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096599.1	4e-70	transcription factor TCP2-like
Refseq	XP_011096600.1	4e-70	transcription factor TCP2-like
Refseq	XP_020554008.1	4e-70	transcription factor TCP2-like
TrEMBL	A0A4D9B5Y7	8e-71	A0A4D9B5Y7_SALSN; Uncharacterized protein
STRING	Migut.M00891.1.p	4e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2464	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	7e-36	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2