PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026773-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 520aa MW: 58487.3 Da PI: 7.7374

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026773-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.4e-19	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+++Le+++++++yps++++ +LA+++gLte+qV+ WF+ rR k+kk SMil_00026773-RA_Salv 21 KKRIVKTHAQVQALEKFYNEHKYPSESMKIQLAESIGLTEKQVSGWFCHRRLKDKK 76 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-21	7	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-18	16	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.0E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	3.08E-17	21	76	No hit	No description
Pfam	PF00046	7.0E-17	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MREDTCEMHH EDDKVLSEKN KKRIVKTHAQ VQALEKFYNE HKYPSESMKI QLAESIGLTE 60 KQVSGWFCHR RLKDKKLING ENHATVRQDR SSGVIQDRGS GHRQDSCGST KQGDDKNLDT 120 REVESGRLTS KEFSAADLTY EHDSHYAGNY NHTNDDSSGS SSSLRNVPPN YQNGDPSDAA 180 TSRYLIPKLP SDVKGVKTRP GPSGYLKLKG RLENPAITAV KRQLGKHYRD DGPPLGVEFD 240 SLPPGAFESS MQEPVEENYH TGEDVRRSPD LLNVRQNSKF CKGSEYLSSM ASFNSDIDGT 300 NFKTRSGSDI PDSYIYRKSK IKTSFSNSGS YYPRSNSSVE FTEGTIRDIP GVGSRDEYGS 360 RRRPGVEVTT MDTVPRYSNL QAFGGKLREK RAESWSQKYN DVSARVAFGE DTENENSNLT 420 ARRNGYHSSV DKGLRGEVIK DDKIYTDRRM INEHQMKIPI KNDTIGKKRL REEFPHQQPP 480 KATLMVDTTP QNYQVIRSAT EMPSSFSEDD ESGGTSSSVD

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MREDTCEMHH EDDKVLSEKN KKRIVKTHAQ VQALEKFYNE HKYPSESMKI QLAESIGLTE  60
KQVSGWFCHR RLKDKKLING ENHATVRQDR SSGVIQDRGS GHRQDSCGST KQGDDKNLDT  120
REVESGRLTS KEFSAADLTY EHDSHYAGNY NHTNDDSSGS SSSLRNVPPN YQNGDPSDAA  180
TSRYLIPKLP SDVKGVKTRP GPSGYLKLKG RLENPAITAV KRQLGKHYRD DGPPLGVEFD  240
SLPPGAFESS MQEPVEENYH TGEDVRRSPD LLNVRQNSKF CKGSEYLSSM ASFNSDIDGT  300
NFKTRSGSDI PDSYIYRKSK IKTSFSNSGS YYPRSNSSVE FTEGTIRDIP GVGSRDEYGS  360
RRRPGVEVTT MDTVPRYSNL QAFGGKLREK RAESWSQKYN DVSARVAFGE DTENENSNLT  420
ARRNGYHSSV DKGLRGEVIK DDKIYTDRRM INEHQMKIPI KNDTIGKKRL REEFPHQQPP  480
KATLMVDTTP QNYQVIRSAT EMPSSFSEDD ESGGTSSSVD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838435.1	0.0	PREDICTED: homeotic protein proboscipedia
TrEMBL	A0A4D9AV99	0.0	A0A4D9AV99_SALSN; Uncharacterized protein
STRING	Migut.N02368.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-71	HB-other family protein