PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026781-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 228aa    MW: 24898.3 Da    PI: 10.6799
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026781-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.48.2e-324107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++
  SMil_00026781-RA_Salv   4 SCNGCRVLRKGCSENCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                            ++ql+q+++e++l ++
  SMil_00026781-RA_Salv  92 SWQLCQTAVEAVLKGA 107
                            **********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5113109IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSENCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPHH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQTAV EAVLKGAPIT QISTDAAEAK  120
NGPPLKAFDI RHVTKDGTLS GSGDLHRVRT RCRFKRSASK GRRSRVWVGS PDESGNGSPS  180
HESALSHQSA TAEPVPERTS RRSEESLGSA ETPEPKPMRI ATRSRRRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.11e-125LOB domain-containing protein 41
SwissprotQ9M8869e-91LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A4D9C3B91e-120A0A4D9C3B9_SALSN; Uncharacterized protein
STRINGMigut.L00314.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-93LOB domain-containing protein 41