PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026819-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 167aa    MW: 19262.4 Da    PI: 5.7549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026819-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-101561347
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                           rWT eEd+++ ++  ++  +   +W++Ia+++g ++++ ++  ++  +
  SMil_00026819-RA_Salv 15 RWTWEEDKQFENCLVEFAEDstdRWEKIAARLG-TKSAAEVEQHYAVL 61
                           9*****************99*************.**********9765 PP
2Myb_DNA-binding47.73.5e-15104148347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eE+ l++ + +++G+g+Wk+I+r++ ++R + q+ s+ qk+
  SMil_00026819-RA_Salv 104 PWSEEEHRLFLVGLEKYGKGDWKSISRYVVLTRNPTQVASHAQKH 148
                            8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7081166IPR017884SANT domain
SMARTSM007172.0E-71264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-51463IPR009057Homeodomain-like
PfamPF002491.6E-81561IPR001005SANT/Myb domain
CDDcd001679.52E-71562No hitNo description
SuperFamilySSF466895.04E-111570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-1196156IPR009057Homeodomain-like
PROSITE profilePS5129419.52997153IPR017930Myb domain
SuperFamilySSF466891.73E-1698154IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-14100152IPR006447Myb domain, plants
SMARTSM007171.5E-11101151IPR001005SANT/Myb domain
PfamPF002492.2E-12104148IPR001005SANT/Myb domain
CDDcd001676.34E-9104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MANTSGSDSA AELSRWTWEE DKQFENCLVE FAEDSTDRWE KIAARLGTKS AAEVEQHYAV  60
LLEDVMAIEE GRIEPPAYDV ARSSEPCPKS EKKQMAGQRK AGRPWSEEEH RLFLVGLEKY  120
GKGDWKSISR YVVLTRNPTQ VASHAQKHFE RQEKEEQNKK RRSIFDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095585.18e-90transcription factor DIVARICATA-like
TrEMBLA0A4D9B7Y81e-93A0A4D9B7Y8_SALSN; Uncharacterized protein
STRINGMigut.M01627.1.p3e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1498869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-46MYB family protein