PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026827-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 173aa    MW: 18712.8 Da    PI: 10.5797
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026827-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.81.1e-1710104297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvq.ecvsefisfvts...easdkcqrekr.ktingddllwalatlGfedyveplk 84 
                            reqdrflPianvsrimkk   ++ kis+  +   +  c s   s  ++    as +++  +r ++  gdd      +lGfe+yv+plk
  SMil_00026827-RA_Salv  10 REQDRFLPIANVSRIMKKRSTGERKISRTPRRRCRsACRSSSASSPAKppiSASVRTEDHQRrRSSLGDD------NLGFENYVDPLK 91 
                            89*************************9988766526877777665542225666666554404445555......79********** PP

                  NF-YB  85 vylkkyrelegek 97 
                            +yl+k+r++e+ek
  SMil_00026827-RA_Salv  92 LYLQKFRDVEEEK 104
                            **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-7847IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.3E-680116IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSRGIIGTPR EQDRFLPIAN VSRIMKKRST GERKISRTPR RRCRSACRSS SASSPAKPPI  60
SASVRTEDHQ RRRSSLGDDN LGFENYVDPL KLYLQKFRDV EEEKTVMAGR RDKDSGGDGD  120
GDADAGFYGL NVMGHQGGPV YGSYHVGATS GAAAARRGGG AGRSSRLGSF TCD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9BZK56e-28A0A4D9BZK5_SALSN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.14e-15nuclear factor Y, subunit B2