PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026969-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 232aa    MW: 25616.6 Da    PI: 8.22
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026969-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192978255
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+++l+g
  SMil_00026969-RA_Salv 29 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAARSLRG 78
                           69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103223.1692986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-312986IPR001471AP2/ERF domain
CDDcd000182.09E-312987No hitNo description
PfamPF008476.3E-122978IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223087IPR016177DNA-binding domain
PRINTSPR003672.9E-103041IPR001471AP2/ERF domain
PRINTSPR003672.9E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRRGRAAARQ AEAIHGGEVN GSGVSKEVRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEDAARAYD TAARSLRGSK AKTNFPVPLN GAVSPNFNPQ NPNQPQIDDN PNDPFMDSRF  120
YPQEHHIIAQ QRPTSSGMSS TVESFSGPRQ LPLHQPFVRQ PRRYPRSPPM VPDDCRSDCD  180
SSSSVVDDTE CDIASSSCKK PLPFDLNMPP PVDAVAGVDA DVDELACTAL RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212590167ATERF1
3gcc_A2e-212590167ATERF1
5wx9_A3e-212090476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095450.11e-110ethylene-responsive transcription factor 3-like
SwissprotQ9SXS84e-60ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A4D9B7V61e-122A0A4D9B7V6_SALSN; EREBP-like factor
STRINGMigut.M01719.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-34ethylene responsive element binding factor 3