PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027079-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 238aa    MW: 27152.7 Da    PI: 5.2799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027079-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09127171655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i  + +eL +l+P       ++++ ae+L+ A +YIk Lq
  SMil_00027079-RA_Salv 127 SIAARQRRRKITVKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 171
                            6788*******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.078121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11122177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-12123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-9124175No hitNo description
PfamPF000101.4E-6127171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MALSYYSNWT SFQQPDYSGD DPELQSLLNP DNYFADSFCN SLLCDDLTYH ANGLPLELDN  60
LTTATQPPPF LLPHQQPLFH FPKRHKLYDY SLPEFVLPPP LPQFPAADFS TRICESAKNE  120
TSLSAQSIAA RQRRRKITVK TQELGKLVPG GQRMNTAEML QSAYNYIKFL QAQVALLEFL  180
GSHHQEVPFE GEEELQNLLE SPLIQEKLYS TQHCLLPNKL AEQVPLLKSN PHLLEKDH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574400.0KP257440.1 Salvia miltiorrhiza clone 7 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554086.17e-51transcription factor bHLH52
TrEMBLA0A0H3YC191e-173A0A0H3YC19_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.M01923.1.p2e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-18bHLH family protein