PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027123-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 145aa    MW: 16277.8 Da    PI: 9.7731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027123-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202878356
                    AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                           ++GVr+++ +gr++AeIrd    + + +r++lg+fgtaeeAa+a+++a+  ++g+
  SMil_00027123-RA_Salv 28 VPGVRRRP-WGRYAAEIRDS---NrHGARVWLGTFGTAEEAARAYDRAAYTMRGH 78
                           78******.**********4...3234**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6012785IPR001471AP2/ERF domain
PRINTSPR003678.1E-92839IPR001471AP2/ERF domain
PfamPF008471.9E-162878IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-222987IPR016177DNA-binding domain
CDDcd000182.35E-143085No hitNo description
Gene3DG3DSA:3.30.730.108.1E-293087IPR001471AP2/ERF domain
SMARTSM003801.3E-283091IPR001471AP2/ERF domain
PRINTSPR003678.1E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAETHGASRD GRKSQRRWQE RQRRGGEVPG VRRRPWGRYA AEIRDSNRHG ARVWLGTFGT  60
AEEAARAYDR AAYTMRGHLA VLNFPQEYPA FASQSSSSSS SSAAAASSST SRNEAEQGKQ  120
VFEFEYLDDK LLEDLLEFGE KNTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-352613113114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835886.11e-45PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC56e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D9AVX73e-58A0A4D9AVX7_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
STRINGMigut.D00418.1.p4e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-13ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]