PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027170-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 109aa    MW: 12566.6 Da    PI: 9.375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027170-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  SMil_00027170-RA_Salv 19 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 66
                           79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5861470IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-221765IPR009057Homeodomain-like
SMARTSM007172.0E-141868IPR001005SANT/Myb domain
PfamPF002494.3E-171966IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-212089IPR009057Homeodomain-like
CDDcd001677.76E-122166No hitNo description
Gene3DG3DSA:1.10.10.604.3E-56688IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
LRNDKMGRQP CCDKVGIKKG PWTPEEDIIL VSYIQEHGPG NWRAVPTNTG LLRCSKSCRL  60
RWTNYLRPGI KRGNFTPHEE GMITHLQALL VDTNFLIREK AYPFLWGLC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593891e-104KF059389.1 Salvia miltiorrhiza MYB-related transcription factor (MYB35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105221.12e-58myb-related protein 306 isoform X1
SwissprotB3VTV78e-57MYB60_VITVI; Transcription factor MYB60
TrEMBLW9RYX65e-57W9RYX6_9ROSA; Myb-related protein 306
STRINGXP_010105221.18e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-59myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]