PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027204-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YC
Protein Properties Length: 199aa    MW: 22309.8 Da    PI: 9.3431
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027204-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC23.51.1e-071171891890
                  NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                            + ++P+ ri + lka++ v+++   aPv l    e++++e+   + ++a++nk++      i+ av + +   
  SMil_00027204-RA_Salv 117 RLQFPVDRIARFLKAEKYVERVGVGAPVYLVVVLEYLVIEVLELADNNAKDNKKTRTVPRHIHLAVRNDEELS 189
                            568**************************************99999999999886666667888887765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004149.0E-3099199IPR002119Histone H2A
PRINTSPR006202.5E-26108130IPR002119Histone H2A
Gene3DG3DSA:1.10.20.102.5E-38109197IPR009072Histone-fold
SuperFamilySSF471131.83E-29110192IPR009072Histone-fold
PfamPF001252.3E-8113183IPR007125Histone H2A/H2B/H3
PRINTSPR006202.5E-26137152IPR002119Histone H2A
PRINTSPR006202.5E-26152165IPR002119Histone H2A
PRINTSPR006202.5E-26166180IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSILSTPRDH RIPYCHVSFR HLVEHHTGII NFSELCASRQ ECRMRVYIGI AYSSIDPFYR  60
YQVPRLGVEG KQGIGNVGKA LKGGFNAEGV ELNAHSDLAG VGAGVVGFSV SQNRKGRLQF  120
PVDRIARFLK AEKYVERVGV GAPVYLVVVL EYLVIEVLEL ADNNAKDNKK TRTVPRHIHL  180
AVRNDEELSK LLRDVMIEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2nqb_C5e-3211319718101Histone H2A
2nqb_G5e-3211319718101Histone H2A
4qlc_C5e-3211319718101Histone H2A
4qlc_G5e-3211319718101Histone H2A
4x23_C4e-32113197487Histone H2A
4x23_G4e-32113197487Histone H2A
4x23_M4e-32113197487Histone H2A
4x23_Q4e-32113197487Histone H2A
5gsu_C5e-3210919714102Histone H2A type 1-A
5gsu_G5e-3210919714102Histone H2A type 1-A
5gt0_C5e-3210919714102Histone H2A type 1-A
5gt0_G5e-3210919714102Histone H2A type 1-A
5wcu_C4e-32113197588Histone H2A
5wcu_G4e-32113197588Histone H2A
5wcu_M4e-32113197588Histone H2A
5wcu_Q4e-32113197588Histone H2A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8Z0M16e-39A0A4D8Z0M1_SALSN; Uncharacterized protein