PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027212-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 178aa    MW: 19749.4 Da    PI: 7.4374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027212-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-1160101854
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            + r+RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  SMil_00027212-RA_Salv  60 AARQRRHRISDRFKILQSLVPGG-----SKMDTVSMLEQAIQYVKFL 101
                            569******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.81552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1457111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1258109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-1458105No hitNo description
SMARTSM003534.4E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-861101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MMMMMSDDNP KFTTSIYPLS LMDYSSFSNP SSCGSTSSEK SKKKRGVAAV KLSTDPQSVA  60
ARQRRHRISD RFKILQSLVP GGSKMDTVSM LEQAIQYVKF LKTQIWLQQA MINLVDVDDA  120
APTISSFQPN NSASALPPLN HQGFDCYAVD RLLPECGQLP ESWFSGQENW ASDASMHS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575430.0KP257543.1 Salvia miltiorrhiza clone 111 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077654.12e-46transcription factor LAX PANICLE
TrEMBLA0A0H3Y8Z91e-113A0A0H3Y8Z9_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_010092808.13e-38(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-29APRATAXIN-like