PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027306-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 538aa    MW: 59384.5 Da    PI: 5.7299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027306-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.71.5e-1361745361374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            lv+ L++cAeav++++++la+al++++  la ++  +m+++a+yf+eALa+r++r    ly   p ++ + +  ++    +  f+e++
  SMil_00027306-RA_Salv 174 LVHSLMACAEAVQQENFKLAEALVKNIGFLAVSQPGAMRKVATYFAEALARRIYR----LY---PINQLD-SAFTDL--LQMHFYETC 251
                            689****************************************************....44...444443.223444..4445***** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P+lkf+h+taNqaIlea++g++rvH+iDf+i+qG+QWp+LlqaLa Rp+gpp++R+T+vg+p++++++ l+e+g++La++A++++v+f
  SMil_00027306-RA_Salv 252 PYLKFAHFTANQAILEAFAGKHRVHVIDFSIKQGMQWPPLLQALALRPGGPPRFRLTAVGPPSQDNTDHLQEVGRKLAQLAKTIDVEF 339
                            **************************************************************************************** PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                            e++ lva++l+dl+   L++++gE++aVn++++lh ll++ +++e+    vL++v++l+P +++vveqea+hn++ F erf+eal+yy
  SMil_00027306-RA_Salv 340 EYRGLVANSLADLSAALLDTREGETVAVNSIFELHPLLAKAGAIEK----VLQVVRELKPAIMTVVEQEANHNGSVFSERFTEALHYY 423
                            **************************************99999999....************************************** PP

                   GRAS 265 salfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                            s+lfdsle+  +  +  ++++++++ +lgr+i+nvvacegaer+erhetl +Wr+rl++aG+++++l+++a+kqa++ll+ ++ +dgy
  SMil_00027306-RA_Salv 424 STLFDSLESCGGDGAvsDQDKVMSEIYLGRQICNVVACEGAERVERHETLCQWRRRLGAAGLEALHLGSNAYKQASMLLALFAgGDGY 511
                            *******98866655569********************************************************************** PP

                   GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                            rv+e++g+l+lgW++rpL+++SaWr
  SMil_00027306-RA_Salv 512 RVDEKHGCLMLGWHTRPLFATSAWR 536
                            ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.2E-3432105No hitNo description
PfamPF120411.2E-333299IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.745148515IPR005202Transcription factor GRAS
PfamPF035145.3E-134174536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MKREPMNQEN FSSSGSCSSS TKPTMWSCDA DDELFAVLGY KVKSSDMAEV AQKIEQLEQV  60
MGSVQQDGLS QLASDTTHYN PSDLSSWLQS MISGLNPMPD FDSFLDSSTI DNSSVNQMVV  120
DSDLTAIPGQ AVYPRTKPPH QTQTQPQPLP KKLKLSPPTE SVVLVDSQEN GIRLVHSLMA  180
CAEAVQQENF KLAEALVKNI GFLAVSQPGA MRKVATYFAE ALARRIYRLY PINQLDSAFT  240
DLLQMHFYET CPYLKFAHFT ANQAILEAFA GKHRVHVIDF SIKQGMQWPP LLQALALRPG  300
GPPRFRLTAV GPPSQDNTDH LQEVGRKLAQ LAKTIDVEFE YRGLVANSLA DLSAALLDTR  360
EGETVAVNSI FELHPLLAKA GAIEKVLQVV RELKPAIMTV VEQEANHNGS VFSERFTEAL  420
HYYSTLFDSL ESCGGDGAVS DQDKVMSEIY LGRQICNVVA CEGAERVERH ETLCQWRRRL  480
GAAGLEALHL GSNAYKQASM LLALFAGGDG YRVDEKHGCL MLGWHTRPLF ATSAWRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-641585352377Protein SCARECROW
5b3h_D1e-641585352377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A4D9BJE70.0A0A4D9BJE7_SALSN; DELLA protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein