PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027340-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 176aa    MW: 19959 Da    PI: 9.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027340-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-101468255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           r+  + +E++RR++++  + +L +l+P+ + + p + +s  + Le A++YIk+ q
  SMil_00027340-RA_Salv 14 RADRKTIEKNRRNEMKALYTNLNSLIPPqPHSRPREMVSLPDQLEAATNYIKMQQ 68
                           677889**********************665777777***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.9531267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-101484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-61468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-61472No hitNo description
Gene3DG3DSA:4.10.280.101.7E-81479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
LHLEMDHQNP SCSRADRKTI EKNRRNEMKA LYTNLNSLIP PQPHSRPREM VSLPDQLEAA  60
TNYIKMQQAK LEKLKQKKNC LVWSKGGPNN LPNIDFRVSG SALEVVLITG LNCQFMFTRI  120
IHLLHEEAAE VVAATFSVLD NTVFHTIHAK IGDQSAQNHG AARISERLKK FAYDCI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575440.0KP257544.1 Salvia miltiorrhiza clone 112 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096311.11e-69transcription factor bHLH125
TrEMBLA0A0H3YBW01e-127A0A0H3YBW0_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_002509465.14e-59(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-26bHLH family protein