PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027348-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 187aa    MW: 21663.1 Da    PI: 10.4764
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027348-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.8e-34201102102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++l+  ++++++sw+++gn fvv+ + ef+k +LpkyFkh+nf+SFvRQLn+YgFkk+ +++         weFkh++F kg
  SMil_00027348-RA_Salv  20 FLSKTYDLLNA-AVERVVSWNSDGNGFVVWSPAEFSKLMLPKYFKHNNFSSFVRQLNTYGFKKTASKR---------WEFKHEKFLKG 97 
                            9*******986.899*************************************************9988.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll +i rkk 
  SMil_00027348-RA_Salv  98 SKHLLVEISRKKV 110
                            ***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3513103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-4316108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.07E-2817108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3020108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-112043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-115769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-117082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGAGGRVGSK PHKMKCPAPF LSKTYDLLNA AVERVVSWNS DGNGFVVWSP AEFSKLMLPK  60
YFKHNNFSSF VRQLNTYGFK KTASKRWEFK HEKFLKGSKH LLVEISRKKV EPSAFPQFLE  120
ASRGRCEDGK MARMIMEENQ NLRRERVELK MQISHFKAVE MRLLECLSHY ITHQNNMEGP  180
TIQNFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-182010829129Heat shock factor protein 1
5d5v_B1e-182010829129Heat shock factor protein 1
5d5v_D1e-182010829129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022845640.16e-78heat stress transcription factor B-2a-like isoform X1
TrEMBLA0A4D8YDX85e-95A0A4D8YDX8_SALSN; Heat shock transcription factor, other eukaryote
STRINGPOPTR_0004s04260.11e-74(Populus trichocarpa)
STRINGAES845271e-74(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-42heat shock transcription factor B2A