PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027418-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 279aa    MW: 31555.7 Da    PI: 6.2863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027418-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002794116123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C + Fs++  L  H++ H
  SMil_00027418-RA_Salv  94 FTCNFCWREFSTSQALGGHQNAH 116
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-691121No hitNo description
Gene3DG3DSA:3.30.160.603.5E-492120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.26194121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESLEPCHSE ASNISVTSKD NKTIEEDENE EEEYGTRYET TSRVGLDLEM ANTELMNKRN  60
PNSKLHELNL FDSLNPSEST EEGRNPKPSK SKTFTCNFCW REFSTSQALG GHQNAHKQER  120
ALAKHRHNMV DLTAAPGAPP PPYGHQLQGY SYYPYSTFHQ QLPNFYGGFN RSHGVRSQSN  180
MIQKPYSYHQ SPSLSPSPLA YCLTREKMPR ANYMIDPSTS SSSTPDYGMK MENFQSHKFD  240
FGVINPNPST KTNEDDKRLR LGNVDDGKDA SGLDLDLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086308.11e-61zinc finger protein 3-like
TrEMBLA0A4D9B2P51e-100A0A4D9B2P5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-15C2H2 family protein