PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027491-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 114aa    MW: 12755.3 Da    PI: 8.2377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027491-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000473153123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ Cg+ F ++  L  H++ H
  SMil_00027491-RA_Salv 31 FGCKFCGRIFYSSQALGGHQNAH 53
                           56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-72858No hitNo description
Gene3DG3DSA:3.30.160.608.1E-42957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3443158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MIQIEETQEQ NLGERLGLNP SATRPYPTKF FGCKFCGRIF YSSQALGGHQ NAHRRERGLV  60
RYFQASLGVQ PHAHLGDGAV TPSTAAPEQD APWPGSYRVV DRQQTEMLDL NLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866594.15e-22zinc finger protein 7-like, partial
TrEMBLA0A4D9A1Z94e-30A0A4D9A1Z9_SALSN; Uncharacterized protein
STRINGXP_010691646.14e-20(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-13zinc-finger protein 1