PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027641-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 553aa    MW: 62006.5 Da    PI: 5.681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027641-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.34.7e-232083091105
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l+elL++cA+a+ +++ ++ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s++ l+++++++e++
  SMil_00027641-RA_Salv 208 LKELLMACARALYENKSAEFEKLVEHARAAVSISGEPIQRLGAYLVEGLIARKESSGTNIYRALKCNEPE---SKDLLSYMHILYEIC 292
                            5799*****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIlea 105
                            P+lkf++++aN aI ea
  SMil_00027641-RA_Salv 293 PYLKFGYMAANGAIAEA 309
                            ***************98 PP
2GRAS284.62.9e-87310552131373
                   GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                            +La+Rp+gpp++RiTg+++p s+  + + l ++++rLa + e++++p+ef++ v     d++ e+L+++pgEalaVn+ lqlh+++de
  SMil_00027641-RA_Salv 310 SLAARPSGPPHVRITGIDDPVSKhaRGDGLAAVERRLAAISEKFNIPVEFHA-VPVFAPDITREMLDIRPGEALAVNFPLQLHHTPDE 396
                            69*****************99988999*************************.6888999**************************** PP

                   GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                            sv+++++rd +L++vksl+Pkvv++veqe+++n+++Fl rf e+l+yysa+f+s+++++pr+++eri+vE+++l+r+ivn++aceg+e
  SMil_00027641-RA_Salv 397 SVDVSNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFLPRFKETLDYYSAMFESIDVTMPRDKKERINVEQQCLARDIVNIIACEGKE 484
                            **************************************************************************************** PP

                   GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            r+erhe ++kWr r+++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  SMil_00027641-RA_Salv 485 RVERHELFGKWRLRFMMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEKDGAMLLGWKDRNLVSASAW 552
                            *************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.245182534IPR005202Transcription factor GRAS
PfamPF035141.6E-20208309IPR005202Transcription factor GRAS
PfamPF035141.0E-84310552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDSRYHGYSD ADLSYDSYPT VSSIPTRLFE SLKFDSRSSP NSPFSPHFEA DAITVYIDNQ  60
EQHSSSDYLS EATHSSDSSV DYSINLQQSR PFSFCHQDSP SVASGVPAFH SNANSNHNIE  120
HALLELESAL MAPELDEQVV KSEPFLGGNR QSRTPDQRPR AWNEEAQGSH SYQSESPRDS  180
RITSSANQVH IESPQGGMED FAFPPNNLKE LLMACARALY ENKSAEFEKL VEHARAAVSI  240
SGEPIQRLGA YLVEGLIARK ESSGTNIYRA LKCNEPESKD LLSYMHILYE ICPYLKFGYM  300
AANGAIAEAS LAARPSGPPH VRITGIDDPV SKHARGDGLA AVERRLAAIS EKFNIPVEFH  360
AVPVFAPDIT REMLDIRPGE ALAVNFPLQL HHTPDESVDV SNPRDGLLRM VKSLNPKVVT  420
LVEQESNTNT APFLPRFKET LDYYSAMFES IDVTMPRDKK ERINVEQQCL ARDIVNIIAC  480
EGKERVERHE LFGKWRLRFM MAGFRQYPLS SYVNSVIRGL LRCYSEHYTL VEKDGAMLLG  540
WKDRNLVSAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4721555225377Protein SCARECROW
5b3h_D3e-4721555225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A4D8ZBW20.0A0A4D8ZBW2_SALSN; Uncharacterized protein
STRINGVIT_19s0014g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-156GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]