PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027756-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 100aa    MW: 11291 Da    PI: 4.7121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027756-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.0004534573255
                           ..TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 32 kapskKlsKaeiLekAveYIksLq 55
                           +++ + +s ae+L++  eYIk+ q
  SMil_00027756-RA_Salv 34 GTKEREMSQAEVLRQIWEYIKDQQ 57
                           566777***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF475924.91E-191893IPR003121SWIB/MDM2 domain
SMARTSM001516.2E-919100IPR019835SWIB domain
Gene3DG3DSA:1.10.245.103.9E-222398IPR003121SWIB/MDM2 domain
PfamPF022011.2E-192493IPR003121SWIB/MDM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MAQDTKRQKV NVESGTDAPV PIVIISEALA SFFGTKEREM SQAEVLRQIW EYIKDQQLED  60
PLSSTTIVCD EKLHDLLGCE SISALEVPEM LAKRHLFKKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852606.15e-46uncharacterized protein LOC111374196 isoform X2
TrEMBLA0A4D9BVJ64e-50A0A4D9BVJ6_SALSN; Upstream activation factor subunit UAF30
STRINGMigut.H01782.1.p5e-39(Erythranthe guttata)