PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027837-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 179aa MW: 19526.4 Da PI: 6.651

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027837-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.4	7.5e-36	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C dC++ap+f eq +++fa+vh++FGa+nv+k+l +lp + r da++ ++yeA ar++dP+yG+v+++++lq+q+ SMil_00027837-RA_Salv 7 SCGACKFLRRRCILDCTFAPHFSYEQaAAHFAAVHRVFGARNVSKMLLRLPLHSRGDAAAMICYEALARVQDPIYGCVAHVFALQHQV 94 6*********************9978******************************************************** PP DUF260 88 eqlkaelallkee 100 + lk+e+++++++ SMil_00027837-RA_Salv 95 AMLKEEIEAIETQ 107 *****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.044	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-34	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MTGAGSSCGA CKFLRRRCIL DCTFAPHFSY EQAAAHFAAV HRVFGARNVS KMLLRLPLHS 60 RGDAAAMICY EALARVQDPI YGCVAHVFAL QHQVAMLKEE IEAIETQMAD LVVDTSTSSL 120 HSFAPSSVGC SDQHSSCMPL SADASVNRAC CSSHIEIEHG LCLQKTLQEL QEYCYLQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	3	108	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	3	108	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101347.1	5e-59	LOB domain-containing protein 33-like
Refseq	XP_027109622.1	5e-59	LOB domain-containing protein 33-like
Refseq	XP_027155343.1	5e-59	LOB domain-containing protein 33-like
Swissprot	Q9LHS8	2e-49	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A4D9BE18	1e-68	A0A4D9BE18_SALSN; Uncharacterized protein
STRING	VIT_13s0019g02060.t01	9e-56	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-40	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]