PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028009-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 111aa MW: 12013.4 Da PI: 6.514

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028009-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	41.2	6.1e-13	3	73	38	89
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg....................k 89 eLG+++d + ieWLlqqa+pa+ ++t+t s +ss+s+ s++ SMil_00028009-RA_Salv 3 ELGHKSDDEMIEWLLQQAEPAMVAATSTisvnfaylniS-----------VRSSNSSLSASlhftslgyfiqgfvaarcivP 73 8***************************54444444331...........33333322222223333355555555555431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	10.974	1	27	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.1E-11	3	74	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MPELGHKSDD EMIEWLLQQA EPAMVAATST ISVNFAYLNI SVRSSNSSLS ASLHFTSLGY 60 FIQGFVAARC IVPSRSSASR RRRAEGDLTR NYIPQSSSGS IPTSQGGVEE T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071008.1	6e-19	transcription factor TCP15
TrEMBL	A0A2R6RFF4	1e-22	A0A2R6RFF4_ACTCH; Transcription factor like
STRING	Migut.L01307.1.p	1e-16	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-12	TCP family protein