PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028065-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 164aa MW: 18172.4 Da PI: 8.3887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028065-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	9.7e-46	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca+dCv+apyfpae+p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ SMil_00028065-RA_Salv 14 PCAACKLLRRRCAEDCVFAPYFPAEEPHKFASVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQID 101 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+++la +++e SMil_00028065-RA_Salv 102 ALQTQLAIAQAE 113 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.314	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-45	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKESSSRKQG AASPCAACKL LRRRCAEDCV FAPYFPAEEP HKFASVHKVF GASNVNKMLQ 60 DLPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAIA QAEVVHMRMR 120 HYSSTSSSPD CASPSTTRGR RSHTHHPKSS FNMEVTNMDD SFWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-50	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-50	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012829903.1	1e-93	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-66	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A4D9BCN8	1e-100	A0A4D9BCN8_SALSN; Uncharacterized protein
STRING	Migut.D00564.1.p	4e-93	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-68	LOB domain-containing protein 4