PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028195-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 252aa    MW: 29642.9 Da    PI: 8.2992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028195-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM904.1e-28101351128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp G++F+Pt  el+++yL +k++g+kl+ + v++  ++y++eP +Lp +++k+ ++ e +fF++  +k+++++ + r+t++gyWk  
  SMil_00028195-RA_Salv  10 LPFGYKFDPTSVELLQHYLIPKLRGEKLPSDYVMDLDHLYTYEPCQLPfNQFKHAKNdEAFFFTTDIRKSSEEESQIRTTSNGYWKVY 97 
                            689***************************66677779**********766665444499**************************99 PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + +v    ge++g k+ L fy g +++  +tdW m eyr 
  SMil_00028195-RA_Salv  98 KDHVAVDI-AGEVIGFKTKLLFY-GVHRN--RTDWKMIEYRC 135
                            99988888.999***********.55555..8********96 PP
2NAM48.43e-1513322240128
                    NAM  40 ykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                            y+++P ++p     ++k+ +++e +fF++  +k+++++ + r+t++gyWk    + +v    ge++g k+ L fy     +g+ tdW 
  SMil_00028195-RA_Salv 133 YRCHPTRIPIdivnRFKHaKNNEAFFFTTDIRKSSEEESHIRTTSNGYWKVYKDHVAVDI-VGEVIGFKTKLLFY---GVHGNITDWK 216
                            689999999435663333266799**************************9999888888.899***********...677889**** PP

                    NAM 123 mheyrl 128
                            m eyr 
  SMil_00028195-RA_Salv 217 MIEYRC 222
                            ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-294138IPR003441NAC domain
PROSITE profilePS5100526.76210151IPR003441NAC domain
PfamPF023658.8E-1611134IPR003441NAC domain
SuperFamilySSF1019419.68E-16141244IPR003441NAC domain
PROSITE profilePS510059.154152244IPR003441NAC domain
PfamPF023651.1E-6155221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDPIKSSLNL PFGYKFDPTS VELLQHYLIP KLRGEKLPSD YVMDLDHLYT YEPCQLPFNQ  60
FKHAKNDEAF FFTTDIRKSS EEESQIRTTS NGYWKVYKDH VAVDIAGEVI GFKTKLLFYG  120
VHRNRTDWKM IEYRCHPTRI PIDIVNRFKH AKNNEAFFFT TDIRKSSEEE SHIRTTSNGY  180
WKVYKDHVAV DIVGEVIGFK TKLLFYGVHG NITDWKMIEY RCHPTRIPIG IAAERYIICK  240
IKLKKVEEEE GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-20513410139Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1513268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.12e-17NAC domain containing protein 84